nnDetection config

nnDetection configuration template

A JSON template used to set the configuration parameters for experiments based on nnDetection framework.
properties
Experiment Name	String describing the experiment, usually related to the selected DL framework/architecture. Example: “Retina UNet”
	type	string
Seed	Random seed number used when randomizing events and actions. Example: 12345
	type	integer
label_suffix	File suffix (including file extension) of the files containing the label map. Example: “_mask.nii.gz”
	type	string
Modalities	Dictionary listing the input modalities. The key-value pair contains the file suffix as key and the modality name as value. Example: “_image.nii.gz”: “CT”
	type	Dict[str,str]
label_dict	Dictionary describing the labels (excluding the background). The key-value pair contains the label value as key (starting from 0) and the label description as value. Example: “0”: “ABD_Lymph_Node”
	type	Dict[str,str]
n_folds	Number of folds to run cross-validation. Example: 5.
	type	integer
FileExtension	String for the file extension of the dataset. “Example: .nii.gz”
	type	string

{
    "Experiment Name": "Retina UNet",
    "Seed": 12345,
    "label_suffix": "_mask.nii.gz",
    "Modalities": {
        "_CT.nii.gz": "CT"
    },
    "label_dict": {
        "0": "ABD_Lymph_Node"
    },
    "n_folds": 5,
    "FileExtension": ".nii.gz"
}